rs6180575 SNP Detail

Summary

• ID
  rs6180575
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:56599598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGAATCATC TTGGAAGAGG AATTCTCAAC AGGGGAAAAC
  AGACAGACAT GTTTCTTGAC TGACAGTTGA TAAGAGAAGT CAGTGTCACC CCTGGGCAGA
  Y
  AGTCCTGAGT TGGATACATT CTATAAACAA ACCATCCAGA GCAAGCCCCT AAGAACGCTT
  CTTCATGGCC TCTGCTTTAG CTCTTACATC TCAGGTCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8586143	WI_WGS_4_55497123	WI	MOUSE	f	SNP				C	T
ss45639043	mCV23143184	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C		T
ss146378649	ENSMUSSNP2285783	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss321132949	CHEV_4_56612470	CHEVERUD	SCREENING_POP	f	SNP							T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6180575					SNP	T	T	T	C	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:56599598 () rs orientation: forward

Symbol	Name	Function Class
D4Mit314	DNA Segment, Chr 4, Massachusetts Institute of Technology-314	1204 bp distal