rs6180576 SNP Detail

Summary

• ID
  rs6180576
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:56599599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAATCATCT TGGAAGAGGA ATTCTCAACA GGGGAAAACA
  GACAGACATG TTTCTTGACT GACAGTTGAT AAGAGAAGTC AGTGTCACCC CTGGGCAGAC
  R
  GTCCTGAGTT GGATACATTC TATAAACAAA CCATCCAGAG CAAGCCCCTA AGAACGCTTC
  TTCATGGCCT CTGCTTTAGC TCTTACATCT CAGGTCCCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8586144	WI_WGS_4_55497124	WI	MOUSE	f	SNP				A	G
ss45705419	mCV23143183	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A		G
ss146378653	ENSMUSSNP3521942	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G			G
ss321132950	CHEV_4_56612471	CHEVERUD	SCREENING_POP	f	SNP							G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6180576					SNP	G	G	G	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:56599599 () rs orientation: forward

Symbol	Name	Function Class
D4Mit314	DNA Segment, Chr 4, Massachusetts Institute of Technology-314	1205 bp distal