rs6180621 SNP Detail

Summary

• ID
  rs6180621
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:56599616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTACATAG TAGCTCATGA
  ACAAAGCATA AGCTGTTGTT CTATGTCTGT CCTGATTAGC TTTTTGTCAG CCTGACATAA
  GCTAGAATCA TCTTGGAAGA GGAATTCTCA ACAGGGGAAA ACAGACAGAC ATGTTTCTTG
  ACTGACAGTT GATAAGAGAA GTCAGTGTCA CCCCTGGGCA GACAGTCCTG AGTTGGATAC
  R
  TTCTATAAAC AAACCATCCA GAGCAAGCCC CTAAGAACGC TTCTTCATGG CCTCTGCTTT
  AGCTCTTACA TCTCAGGTCC CTGCCTTGAG CTCTGCCTGA CTTACAAAAT GAAATAAACC
  ATTCCCTCGC CAAGCTGCTT TTTCTCGTGA TGTTTTAGAA CAGCAATAGA AGCCCTAAGA
  CAAGGTCCTT GTGGGTGTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8586189	WI_WGS_4_55497141	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6180621					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:56599616 () rs orientation: forward

Symbol	Name	Function Class
D4Mit314	DNA Segment, Chr 4, Massachusetts Institute of Technology-314	1222 bp distal