rs6180671 SNP Detail

Summary

• ID
  rs6180671
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:19916494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTGGCTC GACGGTCACA
  TGTTTCCTTT GTTGTGAGCA GTGGCAGAGA CTGGCGGTGG CTCGAGGAGA CGCCGGCGCA
  GCAGGGACGG GGGTCGCCGC TCGTGCCGCT TCCAGCCTGC GCCGAGAGGT ACCAGGGTGG
  CCGCTCCAAG CGGCATGCGA CCGCGGCGCT GATCCCCGGC ACCGGCGGGA GGGAGGCGAG
  R
  TCCCTGGCTG CCAGAAGCCC GATGCGGCCT CGGGCGTGGG GACAGGGCAG GGACGAGCCC
  CGCGGCAGCA ATACACTTAG GGTGGAAGCG GCCGGAGTGT TTCGGCCTCG GACCTGGAGT
  TTCCGTGGGG TGACCGTGAG TGCTGTCGCC TAGCACGGAT AAGGATCGGG GTGCTGGGGC
  CATAGCAGCC AGCAGCACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8586241	WI_WGS_16_19836231	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6180671					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:19916494 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8066	CpG island 8066	within coordinates
Gm59707	predicted gene, 59707	370 bp upstream
Klhl24	kelch-like 24	within coordinates
Rr317031	regulatory region 317031	1294 bp distal
Rr322960	regulatory region 322960	1473 bp distal
Rr325053	regulatory region 325053	within coordinates
Rr404726	regulatory region 404726	166 bp downstream
Rr404727	regulatory region 404727	288 bp upstream
Tssr137417	transcription start site region 137417	148 bp downstream
Tssr137418	transcription start site region 137418	129 bp downstream
Tssr140348	transcription start site region 140348	336 bp downstream