rs6182241 SNP Detail

Summary

• ID
  rs6182241
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:54945670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTGCTGCAA GATGGAGCGG ACATTGAAGA
  ACGCCACCGA TGCTAAGGAA AGAGCCCCTG CCCACATGCA GTTCTCATGT GCATTTTGTG
  CAGTCAGCAA TTCTGTTTTC TCCACAGCCT TCAAAATGTC AGCTTCTCAT GTCAAGCAGT
  R
  TGAGTACGTC AGGCGAAGCG GAGGCTTTCT TATGGTTTCA GGCTGGTAGT ATTTCAGAAC
  CACATGATTG CAGGGCTGAG CTCAGCAGGG CTGTACTGGA GAGCAGATTG CATATCCCTC
  ATGCTGCCCA CATTTCAGAG ACTGATAAAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8587815	WI_WGS_1_55457910	WI	MOUSE	f	SNP							A		G
ss60735308	NES16377611	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G		A	A	A		G	G	G	G		G
ss319726867	CHEV_1_54963355	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6182241					SNP	A	A	A	A	A	A	A	G	G	A	A	A	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60735308	NES16377611	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:54945670 () rs orientation: forward

Symbol	Name	Function Class
Ankrd44	ankyrin repeat domain 44	within coordinates
Rr1418	regulatory region 1418	within coordinates
Rr411098	regulatory region 411098	553 bp distal
Rr411099	regulatory region 411099	within coordinates
Tssr11696	transcription start site region 11696	653 bp downstream