rs6182949 SNP Detail

Summary

• ID
  rs6182949
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:13213304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAACAACTT CCAATCACAC
  CGAAGGCTTA ATGTTAGTTT GCAACCAGGA TGCCGGGCTT CAACCTAAAT TCTAACTCTC
  AACACAAATC CCCGAGGCAT AGTAAAGTAA TCACCCTTAA TAGAAAGCTA CTGGGGGAGA
  GAGGAGGAGG GGAGAAGGCA ATGGGAGAAG GAAAGAGAGA TAGGGAGGGG GGAGGGGAAG
  R
  GATGGGAGGG GGAACGAGAG AGAGCAAGCG CGCAAGAGCG CCAAGCAGTG ACTGCGCAGA
  GCCACGCCCC AATCTGAATG GTTCCCAGCT CAGATAAGAA ACCCCCACAG CTGAAGTCCC
  ATACAGCCCC CTTGGAGAAA CGGCCACTTC CTGTTTACTT TACTGCCTTC CAGCTGGGGG
  CGGGGGGAGC AGTGATGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8588527	WI_WGS_X_10421969	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6182949					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:13213304 () rs orientation: forward

Symbol	Name	Function Class
Gm34661	predicted gene, 34661	within coordinates
Rr370548	regulatory region 370548	within coordinates
Rr394754	regulatory region 394754	1771 bp downstream
Rr690228	regulatory region 690228	166 bp proximal
Tssr163015	transcription start site region 163015	1743 bp upstream