rs6183026 SNP Detail

Summary

• ID
  rs6183026
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115472052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TGTAgcagga
  agatagctgt gtgctcaagg ccagcctgat gtacagagag gcctatctga gcaacaagaa
  aaGGGTGTGT GTGTGGGACA CAGACATTGC AGATAAAGGG AAGAGAAAGA ATGAAGACGG
  GCCTAGGGCT ATTTTTAACA AGTTCTCTTT TCAGAAAGGA ACTATTTGGC TGGTGTTCAT
  ATTGCATGGT ATGTGTGTGG GGGTTGGGTG TTCACGTATA Ctgtgtgtgt gtgtgtgtgt
  R
  tgtgtgtgtg tatgtgtgta tgtTGTTCAT GGACTGAGTG CAAGGTGGAG GTTGGATGGC
  CTTCTGAGAA AGAAAGATGG TTCTGAATTA GGAGTTCCCG GCTGTAGTTT ACTTTGATAC
  TACTCAAACA TATCCATAAA ACGAGCCCTC TGGTAGGCAT AAGGTAGGTA CCCAGAAACA
  GATGGTGATG TGCTGGCTCT GAAGCCAGTG GGAAAGCAAC TAAAAAGAAC TGATTTGTCT
  CTTCATCTCA                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss8588604	WI_WGS_5_113302217	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs6183026					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115472052 () rs orientation: forward

Symbol	Name	Function Class
Gatc	glutamyl-tRNA amidotransferase subunit C	within coordinates
Srsf9	serine and arginine-rich splicing factor 9	913 bp downstream
Tssr48220	transcription start site region 48220	1200 bp downstream
Tssr48221	transcription start site region 48221	1121 bp downstream
Tssr52783	transcription start site region 52783	36 bp downstream
Tssr52784	transcription start site region 52784	75 bp downstream
Tssr52785	transcription start site region 52785	105 bp downstream
Tssr52786	transcription start site region 52786	231 bp downstream
Tssr52787	transcription start site region 52787	276 bp downstream
Tssr52788	transcription start site region 52788	486 bp downstream
Tssr52789	transcription start site region 52789	523 bp downstream