rs6183233 SNP Detail

Summary

• ID
  rs6183233
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48692471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATTTTGA ATGTGGAACT
  TAAGTCTCAA TCCCAGGAAG TGTGGTGCCC ATAGTCTCAC ATTACAGCTG AGATCTACAG
  CTCTTGATAT TGTAGAGTAG TAAGCCTCTT TTATTTATAA CTTGAAGTTT CTCTGTCCCG
  TTTACTGGCC CCAGTGACTT TAAGACTGTA AATGGTGCAC AGTAAGTAGG CTTATACCAA
  Y
  CTTTACCAAC CCTTTTAGAC AAGACCATCA TCATGTGGAA GCTGACCAGA GATGAGACCA
  ACTATGGCAT ACCACAGCGT GCTCTGAGAG GTCACTCCCA CTTCGTTAGT GATGTTGTTA
  TCTCCTCTGA TGGTCAGTTT GCCCTCTCGG GCTCCTGGGA CGGAACGCTG CGCCTCTGGG
  ATCTCACAAC GCAAGTAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8588811	WI_WGS_11_49161107	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6183233					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48692471 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2778	CpG island 2778	762 bp distal
Gm25296	predicted gene, 25296	712 bp downstream
Rack1	receptor for activated C kinase 1	within coordinates
Rr246622	regulatory region 246622	within coordinates
Snord95	small nucleolar RNA, C/D box 95	1495 bp upstream
Snord96a	small nucleolar RNA, C/D box 96A	389 bp upstream
Tssr101138	transcription start site region 101138	1573 bp downstream
Tssr101139	transcription start site region 101139	1275 bp downstream
Tssr101140	transcription start site region 101140	1251 bp downstream
Tssr101141	transcription start site region 101141	776 bp downstream
Tssr101142	transcription start site region 101142	155 bp upstream
Tssr101143	transcription start site region 101143	622 bp upstream
Tssr101144	transcription start site region 101144	665 bp upstream
Tssr101145	transcription start site region 101145	1778 bp upstream
Tssr107635	transcription start site region 107635	1639 bp upstream