rs6183250 SNP Detail

Summary

• ID
  rs6183250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48692478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATGTGGA ACTTAAGTCT
  CAATCCCAGG AAGTGTGGTG CCCATAGTCT CACATTACAG CTGAGATCTA CAGCTCTTGA
  TATTGTAGAG TAGTAAGCCT CTTTTATTTA TAACTTGAAG TTTCTCTGTC CCGTTTACTG
  GCCCCAGTGA CTTTAAGACT GTAAATGGTG CACAGTAAGT AGGCTTATAC CAACCTTTAC
  Y
  AACCCTTTTA GACAAGACCA TCATCATGTG GAAGCTGACC AGAGATGAGA CCAACTATGG
  CATACCACAG CGTGCTCTGA GAGGTCACTC CCACTTCGTT AGTGATGTTG TTATCTCCTC
  TGATGGTCAG TTTGCCCTCT CGGGCTCCTG GGACGGAACG CTGCGCCTCT GGGATCTCAC
  AACGCAAGTA GCTGCTTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8588828	WI_WGS_11_49161114	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6183250					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48692478 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2778	CpG island 2778	769 bp distal
Gm25296	predicted gene, 25296	719 bp downstream
Rack1	receptor for activated C kinase 1	within coordinates
Rr246622	regulatory region 246622	within coordinates
Snord95	small nucleolar RNA, C/D box 95	1488 bp upstream
Snord96a	small nucleolar RNA, C/D box 96A	382 bp upstream
Tssr101138	transcription start site region 101138	1580 bp downstream
Tssr101139	transcription start site region 101139	1282 bp downstream
Tssr101140	transcription start site region 101140	1258 bp downstream
Tssr101141	transcription start site region 101141	783 bp downstream
Tssr101142	transcription start site region 101142	148 bp upstream
Tssr101143	transcription start site region 101143	615 bp upstream
Tssr101144	transcription start site region 101144	658 bp upstream
Tssr101145	transcription start site region 101145	1771 bp upstream
Tssr107635	transcription start site region 107635	1646 bp upstream