rs6183299 SNP Detail

Summary

• ID
  rs6183299
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101610708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAATTCTCT ATTCACTTTT
  CCTAGAGTTT TGGTATTATG CCCATAAACA TAAGCACAAT CTCTAATATC TTCTAGACTG
  GAAATCTGGT TAGATTCAGA GATATGAGGG ATTATTTCCA TATGTAACTC ATAAAAGTTC
  CTTTAAATGA AGAACAAAAA ATAGAGTAGT TAGAGAAGGA TAGTCTATGA GGAAGAGACA
  R
  CATATTCAAA GTTTAGATGC CAAAACTAAA GCAAATACCA TGTTACATAT ATCTCCTGTT
  CTCTCATTTT AGAATGAGAT AGTTTTTCAC TGACTTCTTC CTGGCATTCC TAGTCTAAAT
  TAGAAAGGAT AATTTGAGAT GCTTTATAGA AGAAATCAAG AATCCTAAGT GACAAATAAT
  TGTACAGCTA CAAATAGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8588877	WI_WGS_12_95863251	WI	MOUSE	f	SNP							G		A
ss47242349	NES11397051	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6183299					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47242349	NES11397051	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101610708 () rs orientation: forward

Symbol	Name	Function Class
Gm16285	predicted gene 16285	1737 bp upstream
Tc2n	tandem C2 domains, nuclear	994 bp downstream
Tssr117358	transcription start site region 117358	1825 bp downstream