rs6183625 SNP Detail

Summary

• ID
  rs6183625
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:32180327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGATGAGA TGGACCATCT
  TGATTTAATT ATGCCTTTAG ATTTTAGATG TTTAAAACTC AACAAGTTAT TTTCCCATTT
  CCCATTCACC ACCTAAGGGG GCCTTCCAAC CGCCAGCGGT GTCCTTTGGG CTACCTCAGA
  GGCCGTTGTT CCTCAAGCCG TCCAAGTGTT ACCTTTGACC CAGACACTGG ATCAGTGTAA
  R
  GCAGCACAGC TGGCTTAACA ATTAGCCCAG GAGCCTGCAG AAGGCGCTGG GTGCTCAGAG
  GCTAACTAAT GTCTCCAATC ATCAACAAGT AGTCTTAAAT ATTCCACTTA GAAGTGATTT
  CTTTCTAGAG AAGTCTCCTT TAGAGACCTA AACAAGGTCA GTTGCATAGA ATGATACTTT
  ACTCTCCCTC CACTGACTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8589204	WI_WGS_19_31984709	WI	MOUSE	f	SNP							A		G
ss63246558	NES17481785	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A		A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6183625					SNP	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63246558	NES17481785	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:32180327 () rs orientation: forward

Symbol	Name	Function Class
Gm50210	predicted gene, 50210	1255 bp downstream
Sgms1	sphingomyelin synthase 1	within coordinates