rs6184194 SNP Detail

Summary

• ID
  rs6184194
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:46979539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATGAAAA TGAAAAAAGA
  AAAAAGAAAA GGAGGCCAAG AAAAAGCTGA AGAAAGAGAT ATTCACTGGT TTGCTCACTC
  AGAAATTCAA TAAAAAACAT TAATCTGGAT GCATAATATC TATTGAAAGG ACCAGGGGCA
  GACCCACTCA AGCCATATGT ATGCTGCCTC AGTCTCTACG AGGTTGTAGG AGCTTTGATC
  W
  CCCTATCAGA GATACTTATA ATCATAGTCA TTACTTCTCT ATTCATAATA GCCAGAAATC
  ATAATAACCA TAAACACAAT GGAAATAGCT AATTATTCAA GGAGGAGGAA AAAGAGGAGT
  ATGTGGGGAG GAGTAGGAGA GAGGAAGGGG ATGGGAGAAA ATTTGGGGAG AGACAGCTCC
  AACTAAGGAC CATTTGAGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8589777	WI_WGS_10_47219141	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6184194					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:46979539 () rs orientation: forward

Symbol	Name	Function Class
Rr219611	regulatory region 219611	539 bp distal
Tg(SRY-YFP,Tyr)TashTNpln	transgene insertion TashT, Nicolas Pilon	within coordinates
Tssr97533	transcription start site region 97533	743 bp upstream
Tssr97534	transcription start site region 97534	691 bp upstream