rs6184228 SNP Detail

Summary

• ID
  rs6184228
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83335025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCCAGTT TCCCAGACAA
  GCGGAAGGTA GCATGCAGGG GGCGTGGAGA GGGCGTGGCT GAGGGAAGCG GGAGTTCTTT
  GCTGGGCCTG AGTGGTTTTA GGATTTCTAT ATCCTAGATC TCCCCATTCC TCACACCTTG
  TAATTCAGCT CTGGACCCCT GGAGATGTGG AGGACAGAAG ACAGACACCA GGCATGGCTG
  R
  GACCATCTTA CCTACAGTGA TGGCATCAAA GGAAGAGTGG CAGTATTTAG GACCTCTGGT
  TTCCGGGCGT CTGCTCTGGG AGTTGTGGGG GTCCCAGGCC TCAAAGTCAG TGAACACCTT
  TCCGGGGAGT TGGGTGGCTA CTGAGCGTCC CAGAGGCTTT CCTTACGATC CAAGAAGGGC
  GAGAGAGGAC ATGGGTAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8589811	WI_WGS_11_84096242	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6184228					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83335025 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3415	CpG island 3415	1201 bp distal
Cpgi3416	CpG island 3416	456 bp proximal
Mmp28	matrix metallopeptidase 28 (epilysin)	within coordinates
Rr452960	regulatory region 452960	1526 bp distal
Rr452961	regulatory region 452961	1022 bp proximal