rs6184246 SNP Detail

Summary

• ID
  rs6184246
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70847720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGCGTCT GGCTTTCAAA
  GCAGACCGAG AAAAAAAAAT TAGAAAAAAA ATCTAAGAAG TACAGATAAA GCAAATACAG
  ATTACGAACC ATTATCTTAT TCTGTTTAGG TGAATAATAG GATCATCAAC TGACACTACA
  ATGAAAAATT GATTGGGGAA CTTTTTAAGT GGCAAAATTG AGCTGACTCC TTAGAACTCA
  M
  AGTTTGGTAG CCACATTATC AAAAGTGGGG CAGACAAATA ATCTGCACCT TATGGCATAA
  CACAGGGCTC TGCACGCTTT TTATGTAGAG GTTCAGATAG TAAATATGTA GGTGTCAGAT
  ACCTTGGGCA TCGAAGGATA CATGGTCTCT GTTGCTATTA TAACAATGGT TGCAATTATA
  GTGAGCTCTG CAGTTGCTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8589829	WI_WGS_6_71726178	WI	MOUSE	f	SNP							A		C
ss51674874	NES14816829	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A	A		C		A	A	C		C	A	C		A
ss321816277	CHEV_6_70820730	CHEVERUD	SCREENING_POP	f	SNP													C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6184246					SNP	A	A	C	A	A	A	A	C	C	A	A	C	C	C	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51674874	NES14816829	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70847720 () rs orientation: forward

Symbol	Name	Function Class
Eif2ak3	eukaryotic translation initiation factor 2 alpha kinase 3	within coordinates
Rr399692	regulatory region 399692	1491 bp upstream