rs6184800 SNP Detail

Summary

• ID
  rs6184800
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:46979676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGACCCAC TCAAGCCATA
  TGTATGCTGC CTCAGTCTCT ACGAGGTTGT AGGAGCTTTG ATCTCCCTAT CAGAGATACT
  TATAATCATA GTCATTACTT CTCTATTCAT AATAGCCAGA AATCATAATA ACCATAAACA
  CAATGGAAAT AGCTAATTAT TCAAGGAGGA GGAAAAAGAG GAGTATGTGG GGAGGAGTAG
  R
  AGAGAGGAAG GGGATGGGAG AAAATTTGGG GAGAGACAGC TCCAACTAAG GACCATTTGA
  GGGATAATAT GGAATCCTAA TTTCAATACC ATACACATAT ATGAAGATAA TCTAAATGAA
  GTTAAAACAG TAAGGAATAT AGAGTCCAAC AAGCTGTCTC TTATAACCAA ATGAAGCTTC
  CAGTACCTAG AAATTGAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8590385	WI_WGS_10_47219278	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6184800					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:46979676 () rs orientation: forward

Symbol	Name	Function Class
Rr219611	regulatory region 219611	676 bp distal
Tg(SRY-YFP,Tyr)TashTNpln	transgene insertion TashT, Nicolas Pilon	within coordinates
Tssr97533	transcription start site region 97533	880 bp upstream
Tssr97534	transcription start site region 97534	828 bp upstream