rs6185246 SNP Detail

Summary

• ID
  rs6185246
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:96204189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAAGTAC TATCTGAGAA
  GATTCTTCTG AAAGGATAAG AAATTGAAAT AGTACTTTTT TGATAGATGG AATGCCCAAA
  CCCTACTTAG AGGTAAGATT AAGGACAGCA CCAATGGAGA AAGTATAGTG TAGAGAGGAA
  CCTTGCAGAA TGTGTGTGGT TGAGTCTGGA CAGCAGATGT AATGTCAAGA GGATGGTAGG
  Y
  ATCACACCAA GGCATCTTAG TGATATCCAT GGCTCAATAG GAAGAAGAGA CTGAGTGGAT
  TTTCATGAAA CATTGTCACT CTTTGTTGGA ACCCTTCACA CGGACAGCTG GCTTCTCTAC
  TTAATCCCAG AATTGCAGCT CCTTAAATTC ATAGACTATA AAGTCTGTAC CCATGATTCA
  TCACAATCCT TATATGCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss8590831	WI_WGS_4_94057529	WI	MOUSE	f	SNP					C	T
ss38251879	NES09553368	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C			C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs6185246					SNP	C	C	C	C	C	T	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38251879	NES09553368	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:96204189 () rs orientation: forward

Symbol	Name	Function Class
Cyp2j11	cytochrome P450, family 2, subfamily j, polypeptide 11	within coordinates
Rr376878	regulatory region 376878	910 bp downstream