rs6185357 SNP Detail

Summary

• ID
  rs6185357
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150527508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGTTGCT TTCCCCTTTT
  CAAAGCAATG GAAATAAATT TTACTTGACT GTTTAGAGAC TGTGTTTAAA GAAGGCCTGT
  GGAAGTCATG AGGGAGATTT CTCGGGACAG CTTTCTGTTG ATTGATGGTT ACAAAGCTGT
  ATAGGTGACA AAAACTCTTC TTAAGTTTTT TGTTTAATGA GTTCAGTAGG ATTTCTGGAA
  K
  CATTTTTAGA GCTGTGCTTC ATAGAAATGG ATTCTCTGGC CAGGGTGGTG GTGGTGATAC
  ACGCCTTTAA TCCCAGCATT CCCAGAGGCA AAAGCAGGCA GATCTCAGAC CAGCCTGGTC
  TACAAAGGTA GTTCTAGAAC AGCCAGGGCT ACACAGAGAA ACCCTGTCTC AAAGGAAACA
  AAACAAACAA CAACAACAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8590942	WI_WGS_4_145837128	WI	MOUSE	f	SNP								T		G
ss45611371	mCV24963582	ABI	CRAMUS_MOUSE	f	SNP		G	G					T			T
ss46714740	NES11012821	PERLEGEN	MM_PANEL2	f	SNP	G		G	T	G	T	T		G		T	T	T	G	T	T	G	T
ss148053334	ENSMUSSNP5469732	ENSEMBL	ENSEMBL_Sanger	f	SNP		G									T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6185357					SNP	G	G	G	T	G	T	T	T	G	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46714740	NES11012821	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150527508 () rs orientation: forward

Symbol	Name	Function Class
Gm52709	predicted gene, 52709	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr605300	regulatory region 605300	1089 bp proximal