rs6185649 SNP Detail

Summary

• ID
  rs6185649
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:35125865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGTTGCT GAGGAGTCCC
  TGTCCCAACA CTGAGCATCT CCCTCAAAAT TTGTTCTTCC CAAGGACCCA AGTTCAAATC
  CCAGCAGCCA TGTGGCAGTT CATGCAATGT CAAGTCCAGG GCATCCAACA GGAAGCTCAC
  TGGCATGGCC TTCCGTGTTC CTACCCAGAA TGTAGCCATT GTGGATCTGA CATGCTACCT
  R
  GAGAAACTTG CCAAGTATGA TGGCATCAAG AAAATGGTGA AGCAGGCTTC CAAGGGCCCA
  CTAAAGGTCA TCCTGGGCTA CACTGAGGAC TCAGGGCCAC TGATCTCCCT CACAATTTTC
  ATCCCAGACC CCCCATAATA ACAGGAGGGC TTAGGGAGCC CTCTCTACTT TCTTGAATAC
  CATCAATAAA AGTTCACTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8591234	WI_WGS_13_34311802	WI	MOUSE	f	SNP						G		A
ss51085149	NES14364883	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G		G		G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6185649					SNP	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51085149	NES14364883	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:35125865 () rs orientation: forward

Symbol	Name	Function Class
Gm8245	predicted gene 8245	253 bp downstream
Tex56	testis expressed 56	within coordinates