rs6185704 SNP Detail

Summary

• ID
  rs6185704
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164795445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGT CCACCTTCCT GCAGATTCGA
  Y
  TTGAAGTCTC AGAAGGTGGA TCCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss8591289	WI_WGS_2_165911689	WI	MOUSE	f	SNP									C									T
ss16374321	02.166.818	TWGNF	TWGNF-Mouse-2	f	SNP	C	C	T	C	T	T	C	T	C	C	C	C	C	T	C	T	C	T	T	T	T	T	C	T	T	C	C	T	T	C	T	T	T	C	T	T	T	T		T	T	T	C	T	T	T	T	C	T
ss37515772	NES08880387	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	T		T							C					T		T			T					C		T			T				T									C
ss45289776	mCV23741077	ABI	CRAMUS_MOUSE	f	SNP		C	T						C											T
ss148233716	ENSMUSSNP2490635	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T																	T
ss320607220	CHEV_2_164779025	CHEVERUD	SCREENING_POP	f	SNP																										C																		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs6185704					SNP	C	C	T	C	T	T	C	T	C	C	C	C	C	T	C	T	C	T	T	T	T	T	C	T	T	C	C	T	T	C	T	T	T	C	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515772	NES08880387	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164795445 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12681	CpG island 12681	within coordinates
Mmp9	matrix metallopeptidase 9	Coding-Synonymous
Rr569776	regulatory region 569776	1565 bp distal
Rr569777	regulatory region 569777	881 bp distal
Rr569778	regulatory region 569778	74 bp distal
Tssr21693	transcription start site region 21693	1091 bp downstream