rs6185796 SNP Detail

Summary

• ID
  rs6185796
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90824610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GGTTCCCATT
  CCCCAGCTCT CTAGGGTAGA TGCACGGAAA AATAGAGGTC ACCGTGTCTA TTCCCTCTCT
  GTCAGGGGCC TAAGTAACTA AGTGATTGCT AGTGCCTTGA GAACTTGCTT CATAATTTTG
  CTCTTTTATG GAGGTTTCAG GTCCCATTTA ATCTAAAACC TGGCTTTGAA CATGGGTTTT
  GTTTTTCCAG GAAACCAAAA AGAACTCTGG AGATTCCAAC TTGACCCTAT GTTACAAGCA
  R
  AGACTAGTTT TGCCTTACCT CCTTCTACCC TCCCCTGCTA TCCCAAGAAT GACAAGTCAC
  ATTTTGTATC AGCAGACAAC AAGCAGAGTT CTGTTGAGAG GCAGGAAACT GAGCTGCAAC
  CGTCTTGCCA GATTTGGTAC TGGCATGTGA TATCAGCATT ATCATGGNCT TGGTGGGCTT
  GAAGTGCAGC AGTAATGCTA ACCTTGTTCA CAGTGGCTGA TGTGAGGGAC TGTGNCAGTG
  GAAGAAAGGC                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8591381	WI_WGS_6_91596325	WI	MOUSE	f	SNP							G		A
ss60908341	NES15947363	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6185796					SNP	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60908341	NES15947363	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90824610 () rs orientation: forward

Symbol	Name	Function Class
D6Mit229	DNA segment, Chr 6, Massachusetts Institute of Technology 229	1052 bp distal
Iqsec1	IQ motif and Sec7 domain 1	Intron