rs6186066 SNP Detail

Summary

• ID
  rs6186066
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:57561839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTGAGTTC GAGTCCTAGC
  ACCTGTGTCA GGTGGCTCGT AACTGACTGC AACTTCAGCT CTAGGAGATT TAGCACTCTT
  TTCTGGCCTC TAAAAGCAGT TGCTCACATA TGACATATAC ATATGCACAC ACAAATAAAA
  ATAAGTCTTC TCTTAAAAAA ATAATGATAC CTACATGAAA GACTATGAGA AGTCTTAACT
  W
  TGTAGTGCCT AGTCTGTTGC TTTTGGGTCA AACAGGCACA ATAAGTGTTT GTTGTTACCG
  TTGTTAACTC ATAATGAAAG CAATTAAATT AGAAAAACAA TAAAACTTTC ATTATTTTTC
  TATACTTTTA CCTTTTATTG AAAATAGATT TTATTCTTGC ATAATACAAC CCGATTTCAG
  TCCCCAGTTC CTCCCCACTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8591654	WI_WGS_8_56254193	WI	MOUSE	f	SNP							A		T
ss60617328	NES16286690	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A		A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6186066					SNP	A	A	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60617328	NES16286690	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:57561839 () rs orientation: forward

Symbol	Name	Function Class
Rr678	regulatory region 678	1802 bp proximal
Rr663682	regulatory region 663682	1935 bp proximal