rs6186876 SNP Detail

Summary

• ID
  rs6186876
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31590217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCATTTCT AGATCCAGTT
  AAAGATACTC AAAGCTTTTT TTCTAGGATG GCATTGTGTT TATTGATCAC TTTGATCCTG
  GGCCTAGTAA AGTAACATAA AGACTGGAGG AGGCCTGTTC CCTTGGTGGA CGTGCAGCAC
  CAGGTATGTT GTGGTTTCCA GCTGCTTTCA TGTCCATCTT TTCCTGATCT TTGGCTTTTA
  R
  AACGTTCTAT TTTCCTTTGA ACTCAATCCT TGGTCTTGCT GATAAAAATC CTGTTCGTAT
  AGTTTCATGT GTCAAGAAAT CTGATTCCTG CCGGACAGTG GTGGCTCACG CCTTTAATCC
  CAGCACTTGG GAGGCAGGGG GCAGGCGGAG TTCTGAGTTC GAGGCCAGGC TGGTCTACAG
  AGTGAGTTCC AGGACAGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8592467	WI_WGS_2_32051199	WI	MOUSE	f	SNP							G		A
ss37401548	NES08753506	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6186876					SNP	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37401548	NES08753506	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31590217 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abl1	c-abl oncogene 1, non-receptor tyrosine kinase			Intron
				Noncoding-Transcript-Variant
Gm57832	predicted gene, 57832			within coordinates
Rr554694	regulatory region 554694			1790 bp distal
Rr554695	regulatory region 554695			1526 bp distal
Rr554696	regulatory region 554696			351 bp proximal