rs6187226 SNP Detail

Summary

• ID
  rs6187226
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164795659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGA GAGAGCAAGC CCTTGGAGAT
  K
  GAAGGGAATG TTCTAGATAA GAGCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8592818	WI_WGS_2_165911903	WI	MOUSE	f	SNP								T		G
ss37515770	NES08880389	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	G	G	G		G		G	G	G		T	G	G	G		T
ss45252829	mCV23741088	ABI	CRAMUS_MOUSE	f	SNP		T	G					T			G
ss148233726	ENSMUSSNP5472287	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G								G
ss320607222	CHEV_2_164779239	CHEVERUD	SCREENING_POP	f	SNP														T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6187226					SNP	T	T	G	T	G	G	G	T	G	G	G	G	G	T	T	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515770	NES08880389	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164795659 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12681	CpG island 12681	78 bp distal
Mmp9	matrix metallopeptidase 9	Intron
Rr569776	regulatory region 569776	1779 bp distal
Rr569777	regulatory region 569777	1095 bp distal
Rr569778	regulatory region 569778	288 bp distal
Tssr21693	transcription start site region 21693	1305 bp downstream