rs6187536 SNP Detail

Summary

• ID
  rs6187536
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127441949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGTGGACT ATGGGGGATG
  TAGTTTTATT CAGGTGATGG CCAGGATGGG TTTGGTTTTG GTTTGTGGGA GAGGCTGTGA
  TTTAGAAGTG TTGGCTTTCT CGTTTAGGCA TGAAGCAGGG CCTGCAGAAC CTGCGAGAGG
  AGATCAAACA GCTGGGGAGA GAGGTCCGGG CGCAGCTAAA AGGTGAATGA ATTTCAAGGG
  W
  CTCAGCCATA TCTTTCCCTT TGATTCAGCC CAGTTGCTGG TGTATCTAGT TGTTGTATAC
  AGTCAAGTGA TAGATCCAGG TCACACAGCA GACTTGGGTC TAGGATCTCT GTCCCATGGC
  ATCAAAGCCA TGGTACTTTG CAGAGCACAT TATGGCCTCT CAGATTCCTT TATTATTATT
  TTAAGTTTAA ATTCAAAATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8593128	WI_WGS_7_117704466	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6187536					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127441949 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19771	CpG island 19771	166 bp distal
Gm72953	predicted gene, 72953	294 bp upstream
Rr166763	regulatory region 166763	within coordinates
Rr400656	regulatory region 400656	1061 bp downstream
Stx4a	syntaxin 4A (placental)	within coordinates
Tssr69296	transcription start site region 69296	1759 bp downstream
Tssr69297	transcription start site region 69297	1034 bp downstream
Tssr69298	transcription start site region 69298	974 bp downstream
Tssr69299	transcription start site region 69299	930 bp downstream
Tssr69300	transcription start site region 69300	912 bp downstream
Tssr69301	transcription start site region 69301	897 bp downstream
Tssr69302	transcription start site region 69302	844 bp downstream
Tssr69303	transcription start site region 69303	815 bp downstream
Tssr75044	transcription start site region 75044	1296 bp upstream
Tssr75045	transcription start site region 75045	289 bp upstream