rs6187660 SNP Detail

Summary

• ID
  rs6187660
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135252003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGAAACT GAGAGCCCTT
  TGAGTTTCCT CCTCCCTGAA GATCCCACCT CTTCCTCACA CACCTTCACA TTTTCAGTTT
  GTGCGCATAG CAAGGATGCC ACCCAGCCCC CCCCCACCCC TGCCACACAC ACACACACAC
  ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACCTGCACCC TGTCGCCCAT
  W
  CTCTTATTTT CCTGAGAGGT GGTGAGCGTG CATTGGGGCA ACTGATGCTC CGCTTTCAGG
  TTCTCAAGAA GGGTACCGGT GGGTCGGTTT TGAGAGCTGC CCCTCATCTT GAATTTGTGT
  TTTTCTAGGA TTGTAAACTC CGGGGAGTCC CCCACCCGCC CCTAAAAAAT TACCAAATAC
  AGTAGAAAGG TGGCTGTGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8593252	WI_WGS_1_136192504	WI	MOUSE	f	SNP	A						T
ss45160673	mCV23633449	ABI	CRAMUS_MOUSE	f	SNP		A					T		T
ss51380638	NES14469648	PERLEGEN	MM_PANEL2	f	SNP		A	T	T	T	A		T	T	T	A	T	T	T	T	T
ss145530746	ENSMUSSNP1624949	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6187660					SNP	A	A	T	T	T	A	T	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51380638	NES14469648	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135252003 () rs orientation: forward

Symbol	Name	Function Class
Gm41956	predicted gene, 41956	within coordinates
Lmod1	leiomodin 1 (smooth muscle)	548 bp upstream
Rr12584	regulatory region 12584	398 bp proximal
Rr28593	regulatory region 28593	197 bp proximal
Tssr8958	transcription start site region 8958	505 bp upstream
Tssr8959	transcription start site region 8959	557 bp upstream