rs6187731 SNP Detail

Summary

• ID
  rs6187731
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135252038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTG AGAGGTGGTG AGCGTGCATT
  R
  GGGCAACTGA TGCTCCGCTT TCAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss8593323	WI_WGS_1_136192539	WI	MOUSE	f	SNP	A		G
ss45152623	mCV23633448	ABI	CRAMUS_MOUSE	f	SNP		A	G	A
ss145530754	ENSMUSSNP2114027	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss319989132	CHEV_1_137220877	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs6187731					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135252038 () rs orientation: forward

Symbol	Name	Function Class
Gm41956	predicted gene, 41956	within coordinates
Lmod1	leiomodin 1 (smooth muscle)	513 bp upstream
Rr12584	regulatory region 12584	363 bp proximal
Rr28593	regulatory region 28593	162 bp proximal
Tssr8958	transcription start site region 8958	470 bp upstream
Tssr8959	transcription start site region 8959	522 bp upstream