rs6187837 SNP Detail

Summary

• ID
  rs6187837
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71854086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTACT GACTGATAAC TTGATTCTAC
  M
  AGGCTTATTT TTAGACCTTG TCTGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8593429	WI_WGS_2_72850047	WI	MOUSE	f	SNP							C		A
ss38121783	NES09273044	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	C		A		C	A	C	A	A	C	A	C
ss146754760	ENSMUSSNP6640019	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6187837					SNP	C	C	A	A	A	C	C	A	A	C	A	C	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38121783	NES09273044	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71854086 () rs orientation: forward

Symbol	Name	Function Class
Rapgef4	Rap guanine nucleotide exchange factor (GEF) 4	within coordinates
Rr44434	regulatory region 44434	1486 bp distal
Rr54770	regulatory region 54770	1521 bp distal
Rr54771	regulatory region 54771	87 bp proximal
Rr373343	regulatory region 373343	1647 bp upstream