rs6187891 SNP Detail

Summary

• ID
  rs6187891
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31590358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTATGTTG TGGTTTCCAG
  CTGCTTTCAT GTCCATCTTT TCCTGATCTT TGGCTTTTAG AACGTTCTAT TTTCCTTTGA
  ACTCAATCCT TGGTCTTGCT GATAAAAATC CTGTTCGTAT AGTTTCATGT GTCAAGAAAT
  CTGATTCCTG CCGGACAGTG GTGGCTCACG CCTTTAATCC CAGCACTTGG GAGGCAGGGG
  R
  CAGGCGGAGT TCTGAGTTCG AGGCCAGGCT GGTCTACAGA GTGAGTTCCA GGACAGCCAG
  AGCTACACAG AGAAACCCTG TCTCAAAAAA CAAAACAAAA CAAACAAACA AAAAATTCCG
  ATCTCCCCCC TTCCCCCTTT TTTTTCAGAT TAGGTGTTCA GTACATGTGG AATGAGAGTT
  TACTTTGTGT TGGGCACTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8593483	WI_WGS_2_32051340	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6187891					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31590358 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abl1	c-abl oncogene 1, non-receptor tyrosine kinase			Intron
				Noncoding-Transcript-Variant
Gm57832	predicted gene, 57832			within coordinates
Rr554694	regulatory region 554694			1931 bp distal
Rr554695	regulatory region 554695			1667 bp distal
Rr554696	regulatory region 554696			210 bp proximal