rs6188216 SNP Detail

Summary

• ID
  rs6188216
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135252144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CACACACACA
  CACACACACA CACACACACA CCTGCACCCT GTCGCCCATT CTCTTATTTT CCTGAGAGGT
  GGTGAGCGTG CATTGGGGCA ACTGATGCTC CGCTTTCAGG TTCTCAAGAA GGGTACCGGT
  GGGTCGGTTT TGAGAGCTGC CCCTCATCTT GAATTTGTGT TTTTCTAGGA TTGTAAACTC
  Y
  GGGGAGTCCC CCACCCGCCC CTAAAAAATT ACCAAATACA GTAGAAAGGT GGCTGTGACC
  ACCCAGTGAC AGAAAATGCA TTCTTAAACA GAGCTTGTGT CAGGCTGGCA AGTTAGTGAA
  CCTCACCTCC CGGTCCCTGC TACCCTGGCT TCCAGTGTCC TGCGGCTTCT GCCAGCCTTT
  GCATTTTTCT CTTTTTCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss8593808	WI_WGS_1_136192645	WI	MOUSE	f	SNP	T		C
ss45108264	mCV23633447	ABI	CRAMUS_MOUSE	f	SNP		T	C	C
ss145530757	ENSMUSSNP6094312	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs6188216					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135252144 () rs orientation: forward

Symbol	Name	Function Class
Gm41956	predicted gene, 41956	within coordinates
Lmod1	leiomodin 1 (smooth muscle)	407 bp upstream
Rr12584	regulatory region 12584	257 bp proximal
Rr28593	regulatory region 28593	56 bp proximal
Tssr8958	transcription start site region 8958	364 bp upstream
Tssr8959	transcription start site region 8959	416 bp upstream