rs6188444 SNP Detail

Summary

• ID
  rs6188444
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125992041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAACAAAACA ATCCATTATG CACTAGACCA CATGGTTGTT
  TCAAACTACT GTACTTTGGA GTAATTAGTT ACACAGACAT AGCAACCTAG AACATTGGAA
  M
  ATAGGAATGC TTGCCATATC TATGCATATA TGCACATATG TATATATGTA CATACATGCA
  GCTGAAAGTT CTATTGGATA GTACTTTACT AAGTATAAT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8594037	WI_WGS_2_127131746	WI	MOUSE	f	SNP			C	A
ss147495560	ENSMUSSNP5366317	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6188444					SNP	C	C	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125992041 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12205	CpG island 12205	1714 bp proximal
Fam227b	family with sequence similarity 227, member B	within coordinates
Rr367293	regulatory region 367293	1856 bp upstream
Rr564315	regulatory region 564315	1432 bp proximal
Rr564316	regulatory region 564316	1873 bp proximal
Tssr26028	transcription start site region 26028	1835 bp downstream
Tssr26029	transcription start site region 26029	1847 bp downstream
Tssr26030	transcription start site region 26030	1894 bp downstream