rs6188627 SNP Detail

Summary

• ID
  rs6188627
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84415419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTTCAGG GATTGAACGA
  AGATTATCAG CCTCACTAGG CTTCAGAATA ATTCTCTAAA GAAAATTGGT ACCACTGTAC
  TTGTGGGAAA ATACCTAGAG TTTAAATGTT CTCAGCGCTG CTTTGGGGGG TCGGGAGGAG
  GGAAGCTGAC AGCAGTAGTG GCGCACGCCT TTAATCCCAG CACTCGGGAG ACAGAGGCAG
  R
  TGGATTTCTG TGTTCTAAGC CAGCCTGATC TACAGAGTGA GTTCCAGGAC AGCCAGGGCT
  ACCAGAGAAA CCTTGTGTCA AAAAACAAAA ACAAACAAGC AAAAAAAAAA GAGGATATTG
  GGTTCTGCTT CCTGGTGAAG GAGGCAGAAG AGGAAGTTTA GGAGAGAGGC AAGATTTCCA
  GAAACTTCCT CATAGCTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8594220	WI_WGS_17_83408849	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6188627					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84415419 () rs orientation: forward

Symbol	Name	Function Class
Rr531987	regulatory region 531987	1968 bp proximal
Tssr146028	transcription start site region 146028	191 bp upstream
Tssr149629	transcription start site region 149629	1565 bp upstream