rs6188733 SNP Detail

Summary

• ID
  rs6188733
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35744683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ggattttctt
  ttctggtcca gtctatttgg agttctgtag gcttcttgaa tgttcatggg catctctttc
  tttagatttg ggaagttttc ttctatactt ttgttgaata tatttgctgg ccctttaagt
  tgagaatctt cattctcatc tactacctat tatccgtagg tttggccttc tcattgtgtc
  ctggatttcc tgaatgtttt gagttaggat ctttttgcat tttgcatttt ctttgattgt
  Y
  gtgcncatgt tctctatgga atctctgcaa ctgagattct ctcttccatc tnttgtattc
  tgttgctgaa gctagcatct gtggttccat atttnttttc tagtgtttct atctccagcg
  ttgtctcact ttgggttttc tttattgttt ctacttccct tttcaggttt tgtatggttt
  tattcaattc ttacacctgt ttgtttgtgt tttcctgtat ttctttaagg acttctacct
  ctttagcagt                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8594327	WI_WGS_X_138467612	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6188733					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35744683 () rs orientation: forward

Symbol	Name	Function Class
Gm36974	predicted gene, 36974	2000 bp upstream