rs6188789 SNP Detail

Summary

• ID
  rs6188789
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135252296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCC GGTCCCTGCT ACCCTGGCTT
  Y
  CAGTGTCCTG CGGCTTCTGC CAGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8594383	WI_WGS_1_136192797	WI	MOUSE	f	SNP	T					C
ss44982446	mCV23633446	ABI	CRAMUS_MOUSE	f	SNP		T				C		T
ss51380634	NES14469650	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T		C	T	T	T		T	T	C		T
ss145530760	ENSMUSSNP700863	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
ss319989133	CHEV_1_137221135	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6188789					SNP	T	T	T	T	T	C	C	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51380634	NES14469650	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135252296 () rs orientation: forward

Symbol	Name	Function Class
Gm41956	predicted gene, 41956	within coordinates
Lmod1	leiomodin 1 (smooth muscle)	255 bp upstream
Tssr8958	transcription start site region 8958	212 bp upstream
Tssr8959	transcription start site region 8959	264 bp upstream