rs6188912 SNP Detail

Summary

• ID
  rs6188912
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125992119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAGCAACCT AGAACATTGG AACATAGGAA TGCTTGCCAT
  ATCTATGCAT ATATGCACAT ATGTATATAT GTACATACAT GCAGCTGAAA GTTCTATTGG
  R
  TAGTACTTTA CTAAGTATAA TGTACTAAGC CTAATGACTT TCTGCCATGA ATAATTTCAT
  TATTTAAAAA ATATGGGATT TTGTTTTAGA CAGTGTCTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8594506	WI_WGS_2_127131824	WI	MOUSE	f	SNP			A	G
ss147495565	ENSMUSSNP4436957	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6188912					SNP	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125992119 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12205	CpG island 12205	1636 bp proximal
Dtwd1	DTW domain containing 1	1942 bp upstream
Fam227b	family with sequence similarity 227, member B	within coordinates
Rr367293	regulatory region 367293	1778 bp upstream
Rr564315	regulatory region 564315	1354 bp proximal
Rr564316	regulatory region 564316	1795 bp proximal
Rr564317	regulatory region 564317	1927 bp proximal
Rr564318	regulatory region 564318	1953 bp proximal
Tssr19931	transcription start site region 19931	1932 bp upstream
Tssr19932	transcription start site region 19932	1966 bp upstream
Tssr26028	transcription start site region 26028	1757 bp downstream
Tssr26029	transcription start site region 26029	1769 bp downstream
Tssr26030	transcription start site region 26030	1816 bp downstream