rs6189046 SNP Detail

Summary

• ID
  rs6189046
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110484846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCGG CTGCTATTTG CTTTTAAGCA
  R
  GTAAGGTAGC CTGACTCTGA TTATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8594641	WI_WGS_9_111757076	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6189046					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110484846 () rs orientation: forward

Symbol	Name	Function Class
Ccdc12	coiled-coil domain containing 12	725 bp upstream
Cpgi22385	CpG island 22385	1338 bp distal
Cpgi22386	CpG island 22386	549 bp proximal
Gm42470	predicted gene 42470	within coordinates
Gm69744	predicted gene, 69744	within coordinates
Nbeal2	neurobeachin-like 2	1617 bp upstream
Rr401701	regulatory region 401701	1399 bp downstream
Rr401702	regulatory region 401702	548 bp upstream
Tssr87398	transcription start site region 87398	688 bp upstream
Tssr87399	transcription start site region 87399	716 bp upstream
Tssr91642	transcription start site region 91642	1773 bp upstream
Tssr91643	transcription start site region 91643	1697 bp upstream
Tssr91644	transcription start site region 91644	1566 bp upstream
Tssr91645	transcription start site region 91645	1524 bp upstream
Tssr91646	transcription start site region 91646	604 bp downstream