rs6189403 SNP Detail

Summary

• ID
  rs6189403
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:76899929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGAAGCTG AGCAGTGGGA
  GACTTGATGC TCACCGCCCC GTTTTCACCC TCCACTCCCT CTAAGCAACC CTCCATCTCG
  CCCAAAGGTC AGGGTCTGCT AGTCAGTGAC TTGGATTTGG GGTCAAATGT GACAGTGGAA
  AAGAGATTTT CCCAAAACCA GAAGAAAATG GACTGGGACT TAGGAGACCT GAGCATGACC
  Y
  GGCAGAGCTG ACGAAGGCCA CTTTGCACCT CTGGGCTCCA GGGTAACACT GCCCAGAGCC
  CTGTCCCCAG GGGTGTGGGT GGATGCCACA CTATGCTCCC CTCTTCTGTT CTCTGCTAAC
  CTAGAACACT GCACACGCTA CTTGCTACAC AACACTGGGT CCCAGCTTGG TGGGCTGGAC
  AGTGGGAGCC CATGGCTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8594998	WI_WGS_15_77516166	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6189403					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76899929 () rs orientation: forward

Symbol	Name	Function Class
Gm49540	predicted gene, 49540	within coordinates
Gm52199	predicted gene, 52199	669 bp upstream
Mb	myoglobin	mRNA-UTR
Rr504916	regulatory region 504916	1836 bp distal
Rr504917	regulatory region 504917	1335 bp distal
Rr504918	regulatory region 504918	243 bp distal
Tssr131853	transcription start site region 131853	49 bp upstream
Tssr131854	transcription start site region 131854	84 bp upstream
Tssr131855	transcription start site region 131855	192 bp upstream
Tssr131856	transcription start site region 131856	283 bp upstream
Tssr131857	transcription start site region 131857	1902 bp upstream
Tssr131858	transcription start site region 131858	1978 bp upstream
Tssr135064	transcription start site region 135064	330 bp downstream
Tssr135065	transcription start site region 135065	1915 bp downstream