rs6189476 SNP Detail

Summary

• ID
  rs6189476
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105149572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CTGTGACTTC
  AGCCTCAATT AAGGCTACTT CAATTAAAGC TGTGCTCCCA ATAATACAAT CTCATTATAA
  GGATTTAAAA TATATACAGG TGCATGGAGG ATACAAAGTA CATAGCTTAG AACAAATCTG
  GAACCTAGAA TAGCTAACAA ATAAATATAG GCTAGAATTT TTTAAatgtg tatgagtata
  ttggctgcat gtatgtccat gtaccacatg catagaggcc agaagatgct gttgaacatc
  Y
  cccccccccc cgggactgga gtaatcaaca gttgtgagct gccacatggg tgttgggaac
  caaacctggg tcctctggaa gagcagtcag tgtttttaac cattgagcca tctctccagc
  ccTAAGGAAT TTTTTAAAGG TTAGTTTTTA TTTTTACTCA TGTGTGTGCA CTTTGNTNTG
  TATATTAACG TNTTTATGGG TTCCTGTGGA GGTCAGAAGG GTGTGTCAGA TNCCCTAGAG
  CTAGAGTTAT                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8595072	WI_WGS_X_88960085	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6189476					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105149572 () rs orientation: forward

Symbol	Name	Function Class
Atp7a	ATPase, copper transporting, alpha polypeptide	within coordinates
Rr2535	regulatory region 2535	172 bp distal
Rr8987	regulatory region 8987	103 bp distal
Tssr161765	transcription start site region 161765	783 bp downstream