rs6189754 SNP Detail

Summary

• ID
  rs6189754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:73419678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGAAGTA GAATAGGTCA
  CGTGATAGTA CAAAGTTGTG AGAAAAGAAA GGATCAAAGT ATCTTTACAA GCGAGGATAT
  AATCAAGTGA GGGATGGGGT TGCCATCCCA CAATCACAGC TCTGACCCAT GATAATTCTT
  GCCTGAAAGA ATTACAGGGA TAGAAATGGA GAGGAGCCTG AGGAAAAGAA GGTCCAGTGA
  Y
  AGGCCCAAAG TGGGATCCAG CTCAAGGGGA GGACCCAAGG CCTGACAATA TTACTGAGGC
  TATGGAGCAC TCACAAAAAG GGACCTATCA TGACTGTCTT CTGAAAGACC CAACAAGCAG
  CTGAAAGAGT CAGATGCAGA TGTTTGCACC CATCCAATGG ACAGAAGCAG CTGACCCCTG
  TTGTTGAATT AGGGAAGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8595351	WI_WGS_12_68024795	WI	MOUSE	f	SNP			T	C
ss39006504	mCV24989763	ABI	CRAMUS_MOUSE	f	SNP	T	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6189754					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:73419678 () rs orientation: forward

Symbol	Name	Function Class
D830013O20Rik	RIKEN cDNA D830013O20 gene	within coordinates
Rr257323	regulatory region 257323	1723 bp proximal
Rr264129	regulatory region 264129	1179 bp distal
Rr264130	regulatory region 264130	1744 bp proximal