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rs6190277 SNP Detail
Summary
  • ID
    rs6190277
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr12:73419775 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGTTGCCATC CCACAATCAC
    AGCTCTGACC CATGATAATT CTTGCCTGAA AGAATTACAG GGATAGAAAT GGAGAGGAGC
    CTGAGGAAAA GAAGGTCCAG TGATAGGCCC AAAGTGGGAT CCAGCTCAAG GGGAGGACCC
    AAGGCCTGAC AATATTACTG AGGCTATGGA GCACTCACAA AAAGGGACCT ATCATGACTG
    Y
    CTTCTGAAAG ACCCAACAAG CAGCTGAAAG AGTCAGATGC AGATGTTTGC ACCCATCCAA
    TGGACAGAAG CAGCTGACCC CTGTTGTTGA ATTAGGGAAG GCTGAAAGAA GCTGAGGAGA
    AGGGTAATCC TGTAGGAGGA CCAGCATTCT CAATTAATCT GGACCTCTGG ACCACCAAGC
    AGACAGTATA CACCAGCTGA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
CZECHII/EiJ
DBA/2J
LG/J
SM/J
ss8595876 WI_WGS_12_68024892 WI MOUSE f SNP T C
ss39000456 mCV24989771 ABI CRAMUS_MOUSE f SNP T C T T
ss324098181 CHEV_12_74473988 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
CZECHII/EiJ
DBA/2J
LG/J
SM/J
rs6190277 SNP T C T C T T C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:73419775 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
D830013O20Rik RIKEN cDNA D830013O20 gene within coordinates
Rr257323 regulatory region 257323 1626 bp proximal
Rr264129 regulatory region 264129 1276 bp distal
Rr264130 regulatory region 264130 1647 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory