rs6190277 SNP Detail

Summary

• ID
  rs6190277
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:73419775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGCCATC CCACAATCAC
  AGCTCTGACC CATGATAATT CTTGCCTGAA AGAATTACAG GGATAGAAAT GGAGAGGAGC
  CTGAGGAAAA GAAGGTCCAG TGATAGGCCC AAAGTGGGAT CCAGCTCAAG GGGAGGACCC
  AAGGCCTGAC AATATTACTG AGGCTATGGA GCACTCACAA AAAGGGACCT ATCATGACTG
  Y
  CTTCTGAAAG ACCCAACAAG CAGCTGAAAG AGTCAGATGC AGATGTTTGC ACCCATCCAA
  TGGACAGAAG CAGCTGACCC CTGTTGTTGA ATTAGGGAAG GCTGAAAGAA GCTGAGGAGA
  AGGGTAATCC TGTAGGAGGA CCAGCATTCT CAATTAATCT GGACCTCTGG ACCACCAAGC
  AGACAGTATA CACCAGCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8595876	WI_WGS_12_68024892	WI	MOUSE	f	SNP			T	C
ss39000456	mCV24989771	ABI	CRAMUS_MOUSE	f	SNP	T	C	T		T
ss324098181	CHEV_12_74473988	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6190277					SNP	T	C	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:73419775 () rs orientation: forward

Symbol	Name	Function Class
D830013O20Rik	RIKEN cDNA D830013O20 gene	within coordinates
Rr257323	regulatory region 257323	1626 bp proximal
Rr264129	regulatory region 264129	1276 bp distal
Rr264130	regulatory region 264130	1647 bp proximal