rs6190372 SNP Detail

Summary

• ID
  rs6190372
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:76900089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAAAATG GACTGGGACT
  TAGGAGACCT GAGCATGACC CGGCAGAGCT GACGAAGGCC ACTTTGCACC TCTGGGCTCC
  AGGGTAACAC TGCCCAGAGC CCTGTCCCCA GGGGTGTGGG TGGATGCCAC ACTATGCTCC
  CCTCTTCTGT TCTCTGCTAA CCTAGAACAC TGCACACGCT ACTTGCTACA CAACACTGGG
  Y
  CCCAGCTTGG TGGGCTGGAC AGTGGGAGCC CATGGCTCAG CCCTGGAAGC CTAGCTCCTT
  GTACTTGGCG GCAATGTCAT TCCGGAAGAG CTCCAGGGCC TTGCTCATGG CGCCCTGAGC
  ATCTGCTCCA AAGTCCCCGG AATGTCTCTT CTTCAGGACT TCAATGATAA TTTCTGAGAT
  AAACTGCAAG AAAGGGACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8595972	WI_WGS_15_77516326	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6190372					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76900089 () rs orientation: forward

Symbol	Name	Function Class
Gm49540	predicted gene, 49540	within coordinates
Gm52199	predicted gene, 52199	829 bp upstream
Mb	myoglobin	mRNA-UTR
Rr504916	regulatory region 504916	1996 bp distal
Rr504917	regulatory region 504917	1495 bp distal
Rr504918	regulatory region 504918	403 bp distal
Tssr131853	transcription start site region 131853	102 bp downstream
Tssr131854	transcription start site region 131854	51 bp downstream
Tssr131855	transcription start site region 131855	32 bp upstream
Tssr131856	transcription start site region 131856	123 bp upstream
Tssr131857	transcription start site region 131857	1742 bp upstream
Tssr131858	transcription start site region 131858	1818 bp upstream
Tssr135064	transcription start site region 135064	170 bp downstream
Tssr135065	transcription start site region 135065	1755 bp downstream