rs6190493 SNP Detail

Summary

• ID
  rs6190493
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105149750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAAGATG CTGTTGAACA
  TCCCCCCCCC CCCCGGGACT GGAGTAATCA ACAGTTGTGA GCTGCCACAT GGGTGTTGGG
  AACCAAACCT GGGTCCTCTG GAAGAGCAGT CAGTGTTTTT AACCATTGAG CCATCTCTCC
  AGCCCTAAGG AATTTTTTAA AGGTTAGTTT TTATTTTTAC TCATGTGTGT GCACTTTGAT
  R
  TGTATATTAA CGTATTTATG GGTTCCTGTG GAGGTCAGAA GGGTGTGTCA GATTCCCTAG
  AGCTAGAGTT ATAGGTTGTT GAGACCTGCC CAATACTGGT GCTAGGAACT GAACTGGGGT
  CCTCTGCAAG AACACAAACT GCTTTTAAGC ACCGAGTCTC CAGTCCCCAG GGTACTAGTT
  CTTATAGGAA AAAAAATGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8596095	WI_WGS_X_88960263	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6190493					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105149750 () rs orientation: forward

Symbol	Name	Function Class
Atp7a	ATPase, copper transporting, alpha polypeptide	within coordinates
Rr2535	regulatory region 2535	350 bp distal
Rr8987	regulatory region 8987	281 bp distal
Tssr161765	transcription start site region 161765	961 bp downstream