rs6190705 SNP Detail

Summary

• ID
  rs6190705
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:114858775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTCATGT CGCCAGGTTT
  AGTACTTTTT AAAAGTCTTG GGAATGGGGT TGGAGAGTTC GATCAGCAGT TAAAAGCACA
  ATATATTGTT CTTTCGGAGG ACCAGAGTTC AGTTCCCAGA ATGCACATCA GGCTGCTTAT
  ATGTCTATAA TTCTAGCATG CATACAAACA GACATACCTA TATACATAAA TAAAAATAAA
  Y
  GTAAAATCTC GGGAACTGTG GTACAACTGT TCCCTTAGCT ATAATGGGAT TCTCATGAGT
  TCTGAGTACT CTTGTTTTTA TGGAATTATT CTTTCATTAA AAAAATAATA TAATATACAA
  TGAATTATAT TTTTTTACTA TACTGATGTA GGGATGAATT CAGTTTTTGA CTCATTCTTA
  TATATTACTT AATTTTACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss8596308	WI_WGS_8_114067421	WI	MOUSE	f	SNP							T		C
ss51975815	NES14994003	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs6190705					SNP	T	T	T	T	T	T	T	C	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51975815	NES14994003	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:114858775 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21082	CpG island 21082	1415 bp proximal
Gm56821	predicted gene, 56821	within coordinates
Nudt7	nudix hydrolase 7	1539 bp upstream
Rr401147	regulatory region 401147	1374 bp upstream
Rr670351	regulatory region 670351	1044 bp distal
Rr670352	regulatory region 670352	549 bp distal
Rr670353	regulatory region 670353	875 bp proximal
Rr670354	regulatory region 670354	1618 bp proximal
Tssr79531	transcription start site region 79531	1534 bp upstream
Tssr79532	transcription start site region 79532	1566 bp upstream
Tssr79533	transcription start site region 79533	1600 bp upstream
Tssr83006	transcription start site region 83006	1025 bp upstream
Tssr83007	transcription start site region 83007	440 bp upstream
Tssr83008	transcription start site region 83008	431 bp upstream