rs6190706 SNP Detail

Summary

• ID
  rs6190706
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:114858776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCATGTC GCCAGGTTTA
  GTACTTTTTA AAAGTCTTGG GAATGGGGTT GGAGAGTTCG ATCAGCAGTT AAAAGCACAA
  TATATTGTTC TTTCGGAGGA CCAGAGTTCA GTTCCCAGAA TGCACATCAG GCTGCTTATA
  TGTCTATAAT TCTAGCATGC ATACAAACAG ACATACCTAT ATACATAAAT AAAAATAAAT
  K
  TAAAATCTCG GGAACTGTGG TACAACTGTT CCCTTAGCTA TAATGGGATT CTCATGAGTT
  CTGAGTACTC TTGTTTTTAT GGAATTATTC TTTCATTAAA AAAATAATAT AATATACAAT
  GAATTATATT TTTTTACTAT ACTGATGTAG GGATGAATTC AGTTTTTGAC TCATTCTTAT
  ATATTACTTA ATTTTACATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8596309	WI_WGS_8_114067422	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6190706					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:114858776 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21082	CpG island 21082	1414 bp proximal
Gm56821	predicted gene, 56821	within coordinates
Nudt7	nudix hydrolase 7	1538 bp upstream
Rr401147	regulatory region 401147	1373 bp upstream
Rr670351	regulatory region 670351	1045 bp distal
Rr670352	regulatory region 670352	550 bp distal
Rr670353	regulatory region 670353	874 bp proximal
Rr670354	regulatory region 670354	1617 bp proximal
Tssr79531	transcription start site region 79531	1533 bp upstream
Tssr79532	transcription start site region 79532	1565 bp upstream
Tssr79533	transcription start site region 79533	1599 bp upstream
Tssr83006	transcription start site region 83006	1026 bp upstream
Tssr83007	transcription start site region 83007	441 bp upstream
Tssr83008	transcription start site region 83008	432 bp upstream