rs6190720 SNP Detail

Summary

• ID
  rs6190720
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:114858785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCAGGTTT AGTACTTTTT
  AAAAGTCTTG GGAATGGGGT TGGAGAGTTC GATCAGCAGT TAAAAGCACA ATATATTGTT
  CTTTCGGAGG ACCAGAGTTC AGTTCCCAGA ATGCACATCA GGCTGCTTAT ATGTCTATAA
  TTCTAGCATG CATACAAACA GACATACCTA TATACATAAA TAAAAATAAA TGTAAAATCT
  Y
  GGGAACTGTG GTACAACTGT TCCCTTAGCT ATAATGGGAT TCTCATGAGT TCTGAGTACT
  CTTGTTTTTA TGGAATTATT CTTTCATTAA AAAAATAATA TAATATACAA TGAATTATAT
  TTTTTTACTA TACTGATGTA GGGATGAATT CAGTTTTTGA CTCATTCTTA TATATTACTT
  AATTTTACAT TCAATTTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8596324	WI_WGS_8_114067431	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6190720					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:114858785 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21082	CpG island 21082	1405 bp proximal
Gm56821	predicted gene, 56821	within coordinates
Nudt7	nudix hydrolase 7	1529 bp upstream
Rr401147	regulatory region 401147	1364 bp upstream
Rr670351	regulatory region 670351	1054 bp distal
Rr670352	regulatory region 670352	559 bp distal
Rr670353	regulatory region 670353	865 bp proximal
Rr670354	regulatory region 670354	1608 bp proximal
Tssr79531	transcription start site region 79531	1524 bp upstream
Tssr79532	transcription start site region 79532	1556 bp upstream
Tssr79533	transcription start site region 79533	1590 bp upstream
Tssr83006	transcription start site region 83006	1035 bp upstream
Tssr83007	transcription start site region 83007	450 bp upstream
Tssr83008	transcription start site region 83008	441 bp upstream