rs6190795 SNP Detail

Summary

• ID
  rs6190795
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:114858838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAGTTAA AAGCACAATA
  TATTGTTCTT TCGGAGGACC AGAGTTCAGT TCCCAGAATG CACATCAGGC TGCTTATATG
  TCTATAATTC TAGCATGCAT ACAAACAGAC ATACCTATAT ACATAAATAA AAATAAATGT
  AAAATCTCGG GAACTGTGGT ACAACTGTTC CCTTAGCTAT AATGGGATTC TCATGAGTTC
  Y
  GAGTACTCTT GTTTTTATGG AATTATTCTT TCATTAAAAA AATAATATAA TATACAATGA
  ATTATATTTT TTTACTATAC TGATGTAGGG ATGAATTCAG TTTTTGACTC ATTCTTATAT
  ATTACTTAAT TTTACATTCA ATTTCTTTGA ATTTTAAGAG AAGAAAAGAA AAATAAAAAA
  GAAGTAGAAG ACATGAATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8596399	WI_WGS_8_114067484	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6190795					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:114858838 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21082	CpG island 21082	1352 bp proximal
Gm56821	predicted gene, 56821	within coordinates
Nudt7	nudix hydrolase 7	1476 bp upstream
Rr401147	regulatory region 401147	1311 bp upstream
Rr670351	regulatory region 670351	1107 bp distal
Rr670352	regulatory region 670352	612 bp distal
Rr670353	regulatory region 670353	812 bp proximal
Rr670354	regulatory region 670354	1555 bp proximal
Tssr79531	transcription start site region 79531	1471 bp upstream
Tssr79532	transcription start site region 79532	1503 bp upstream
Tssr79533	transcription start site region 79533	1537 bp upstream
Tssr83006	transcription start site region 83006	1088 bp upstream
Tssr83007	transcription start site region 83007	503 bp upstream
Tssr83008	transcription start site region 83008	494 bp upstream