rs6190924 SNP Detail

Summary

• ID
  rs6190924
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105149804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGAGCTG CCACATGGGT
  GTTGGGAACC AAACCTGGGT CCTCTGGAAG AGCAGTCAGT GTTTTTAACC ATTGAGCCAT
  CTCTCCAGCC CTAAGGAATT TTTTAAAGGT TAGTTTTTAT TTTTACTCAT GTGTGTGCAC
  TTTGATATGT ATATTAACGT ATTTATGGGT TCCTGTGGAG GTCAGAAGGG TGTGTCAGAT
  Y
  CCCTAGAGCT AGAGTTATAG GTTGTTGAGA CCTGCCCAAT ACTGGTGCTA GGAACTGAAC
  TGGGGTCCTC TGCAAGAACA CAAACTGCTT TTAAGCACCG AGTCTCCAGT CCCCAGGGTA
  CTAGTTCTTA TAGGAAAAAA AATGGCATAA CTTCAAACCT AAAAAAGTAT TGCCTTTTCT
  GCAGCTGTTG GGTACCTATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8596528	WI_WGS_X_88960317	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6190924					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105149804 () rs orientation: forward

Symbol	Name	Function Class
Atp7a	ATPase, copper transporting, alpha polypeptide	within coordinates
Rr2535	regulatory region 2535	404 bp distal
Rr8987	regulatory region 8987	335 bp distal
Tssr161765	transcription start site region 161765	1015 bp downstream