rs6191022 SNP Detail

Summary

• ID
  rs6191022
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34885081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGCGGCCC TGCTCCCTCG
  CACCACCCGC GCATGAATTT GCCCCGCGAT CTGGGCTGCA CCGCCCAATG GCTTCCGGGA
  GGAGGCAGGC TTCCCAGGAT CCTGGGCCCG ATACCTCCTT GCTACCACAA TTGTTCTCTT
  CCCGTCTCTC TGGCACTTCC AGCGGTCTGG TCACCTTGAG CCATGCTAGA CGGCCTGGGC
  M
  AAAGTCCCAG TCCACTGTGC CCTGACTGAC CTGTGTAGAG GAGTCTGCGG TGGGGACCTA
  AGGCTGGACC CGAAGAGGAA TTAGGGGATG CTGAGGCAGG GATAGATTTG ATGGTGATGG
  GGACTGTCCC AAACTCCCAG GATGCCCGGG GCCCCACTGG GGTCTCCTTA TCTTCAACTC
  TTCTCAAGCC TTTTGCCTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8596629	WI_WGS_7_25683653	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6191022					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34885081 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18861	CpG island 18861	within coordinates
Gm38988	predicted gene, 38988	697 bp upstream
Rr645330	regulatory region 645330	within coordinates
Rr645331	regulatory region 645331	67 bp proximal
Rr645332	regulatory region 645332	312 bp proximal
Slc7a10	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	729 bp upstream
Tssr65893	transcription start site region 65893	702 bp upstream
Tssr65894	transcription start site region 65894	714 bp upstream
Tssr65895	transcription start site region 65895	753 bp upstream