rs6191168 SNP Detail

Summary

• ID
  rs6191168
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106111040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATTTCTA AATGAACCAT
  CACATTTTGG TGCCTGGATA CCAAGCTGTC CTTTATAGCA TCTTCAGTTA TTCTCATCCA
  AGGGTAGCTC CTCTTTAAAA CTCTTGTATG TAAAGCATGA ATAATGAGTA TCTGCTCTTA
  AAGACCTAAG AGAGTGAATG TAAATACTCA GCCATGAGAT GTATCGTGTT TAAGAAACAA
  Y
  GTAGTGCCAG GTGTTTAAAG ACCAGAGAAG GGGTTTAACA TAAATCTATA CAAATCATAT
  TTGTGTTGAT GCTCTAGAAT TGTTATTCCA GTGAGCTGTA CAGGTAAGAA GGACCTTGAT
  AGGTCAATGT CAATAACAGA TTTTGTGTGG GAGAACCCAA GTAGAGGTAA GAACTCCATC
  AGACTGCTTG ATTTTCTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8596775	WI_WGS_11_107007662	WI	MOUSE	f	SNP							T		C
ss37271527	NES08547118	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T		T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6191168					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37271527	NES08547118	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106111040 () rs orientation: forward

Symbol	Name	Function Class
Ddx42	DEAD box helicase 42	within coordinates
Rr242830	regulatory region 242830	1664 bp proximal
Rr245973	regulatory region 245973	1239 bp distal