rs6191380 SNP Detail

Summary

• ID
  rs6191380
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:84086758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAATAACT TATGAGCTGA
  TTGTGAAAAC ACTCAGAGCA TATTACCAAT TAAAAAAAAA AAAAAACAAA GGAAGCAGTT
  ACATTTAGAC CAATCAGAGA ACATTAATTT TTCTAGCTAT AATCATAGAA TAAAAAGTAC
  TTTATCATTT GCCAAACACA TTAATCACGA ATGTAGAGAA CCCTCTAAGA AAAAAAAAAA
  R
  TTTATCAGCT TTTTTACCCC AAAACTAAGA GGCTGTAGAC TCTCCTTTTT TCCTATAAGG
  AACAGCTTTT CCAGCAGGGG CCCTCTTGCC GTGTGCCTGT TTCCTGGTTG AAGCATGTGG
  CCGCTCTCGG CTTTGCAGAT AAAGTTTTTT TTTTTTTAGC CATCTTTATT ATCCAACATA
  AAACATAGAA CATTCATTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8596989	WI_WGS_12_78728270	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6191380					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:84086758 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4732463B04Rik	RIKEN cDNA 4732463B04 gene			within coordinates
Acot4	acyl-CoA thioesterase 4			Intron
				Noncoding-Transcript-Variant
Gm40474	predicted gene, 40474			within coordinates
Gm49366	predicted gene, 49366			Intron
Rr469550	regulatory region 469550			1463 bp distal
Tssr114309	transcription start site region 114309			1605 bp downstream
Tssr114310	transcription start site region 114310			1549 bp downstream