rs6191556 SNP Detail

Summary

• ID
  rs6191556
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34885185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCCGATAC CTCCTTGCTA
  CCACAATTGT TCTCTTCCCG TCTCTCTGGC ACTTCCAGCG GTCTGGTCAC CTTGAGCCAT
  GCTAGACGGC CTGGGCCAAA GTCCCAGTCC ACTGTGCCCT GACTGACCTG TGTAGAGGAG
  TCTGCGGTGG GGACCTAAGG CTGGACCCGA AGAGGAATTA GGGGATGCTG AGGCAGGGAT
  R
  GATTTGATGG TGATGGGGAC TGTCCCAAAC TCCCAGGATG CCCGGGGCCC CACTGGGGTC
  TCCTTATCTT CAACTCTTCT CAAGCCTTTT GCCTTCAGAA TTGTTTTAAG GACAGTCTCC
  ATTCATCCCA AATGACTCAG TCAGGACCGC CTAGAGGCCA GGGAGCTATC AAAAAGTCTT
  CATGGAGACC GTGCCACTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8597165	WI_WGS_7_25683757	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6191556					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34885185 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18861	CpG island 18861	within coordinates
Gm38988	predicted gene, 38988	801 bp upstream
Rr645330	regulatory region 645330	38 bp distal
Rr645331	regulatory region 645331	within coordinates
Rr645332	regulatory region 645332	208 bp proximal
Slc7a10	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	625 bp upstream
Tssr65893	transcription start site region 65893	598 bp upstream
Tssr65894	transcription start site region 65894	610 bp upstream
Tssr65895	transcription start site region 65895	649 bp upstream